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Table 2 Top 10 variants in each group, sorted by allele frequency

From: Heterogeneity in susceptibility to polycystic ovary syndrome among women with epilepsy

Group

SNP

Gene

Full name

Gene ID

Gene type

Allele frequency

Group A

chr11:102,724,404:T:C

MMP8

Matrix metallopeptidase 8

4317

Protein-coding

0.5714

chr12:10,408,358:T:C

KLRC4

Killer cell lectin like receptor C4

8302

Protein-coding

0.5714

chr8:9,811,825:T:C

-

-

-

-

0.5714

chr6:31,372,381:A:G

-

-

-

-

0.5

chr4:31,149,735:G:A

PCDH7

Protocadherin 7

5099

Protein-coding

0.5

chr21:30,811,678:G:A

KRTAP8-1

Keratin associated protein 8–1

337,879

Protein-coding

0.5

chr1:67,287,825:C:T

-

-

-

-

0.5

chr8:125,334,735:G:A

NSMCE2

NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase

286,053

Protein-coding

0.5

chr2:62,325,541:A:G

-

-

-

-

0.5

chr11:46,777,081:A:G

CKAP5

Cytoskeleton associated protein 5

9793

Protein-coding

0.5

Group B

chr21:30,811,678:G:A

KRTAP8-1

Keratin associated protein 8–1

337,879

Protein-coding

0.7

chr12:10,408,358:T:C

KLRC4

Killer cell lectin like receptor C4

8302

Protein-coding

0.7

chr8:125,334,735:G:A

NSMCE2

NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase

286,053

Protein-coding

0.7

chr1:67,287,825:C:T

-

-

-

-

0.6

chr4:46,238,270:G:T

-

-

-

-

0.6

chr5:16,835,896:T:C

MYO10

Myosin X

4651

Protein-coding

0.6

chr4:61,587,491:A:G

ADGRL3

Adhesion G protein-coupled receptor L3

23,284

Protein-coding

0.5

chr6:31,368,641:G:A

-

-

-

-

0.5

chr6:31,372,381:A:G

-

-

-

-

0.5

chr4:31,149,735:G:A

PCDH7

Protocadherin 7

5099

Protein-coding

0.5

Group C

chr12:10,408,358:T:C

KLRC4

Killer cell lectin like receptor C4

8302

Protein-coding

0.5938

chr12:112,825,713:A:C

RPH3A

Rabphilin 3A

22,895

Protein-coding

0.5625

chr5:66,856,430:A:G

MAST4

Microtubule-associated serine/threonine kinase family member 4

375,449

Protein-coding

0.5625

chr2:62,325,541:A:G

-

-

-

-

0.5312

chr11:98,216,871:C:T

-

-

-

-

0.5

chr8:9,811,825:T:C

-

-

-

-

0.4688

chr16:79,721,183:C:A

LINC01229

Long intergenic non-protein coding RNA 1229

101,928,248

ncRNA

0.4688

chr8:125,334,735:G:A

NSMCE2

NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase

286,053

Protein-coding

0.4375

chr1:67,287,825:C:T

-

-

-

-

0.4375

chr4:46,238,270:G:T

-

-

-

-

0.4375

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Acta Epileptologica

ISSN: 2524-4434

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